The following tools have been installed/updated on Galaxy Australia
Annotation
- snpeff was updated to 268d162b9c49
- snpeff was updated to 5a29ab10dba6
- snpeff was updated to 74aebe30fb52
Assembly
- bandage revision b2860df42e16 was installed
- spades was updated to b8c00ce5dfa0
Collection Operations
- collapse_collections was updated to 33151a38533a
- collapse_collections was updated to 830961c48e42
EMBOSS
- emboss_5 was updated to dba489bfcd62
FASTA/FASTQ
- fastp revision 1d8fe9bc4cb0 was installed
FASTQ Quality Control
- fastqc was updated to e7b2202befea
- trim_galore was updated to 084bbd8ba7b8
Get Data
- ncbi_acc_download revision 1c58de56d587 was installed
Mapping
- bwa was updated to 01ac0a5fedc3
Metabolomics
- tablemerge revision e44c5246247a was installed
Metagenomic analyses
- picrust_categorize revision bee527de98ac was installed
- picrust_compare_biom revision 0ba7dfaa941d was installed
- picrust_format_tree_and_trait_table revision 8ab93cd74444 was installed
- picrust_metagenome_contributions revision da4d1ff7009e was installed
- picrust_normalize_by_copy_number revision 2e62e32d4f33 was installed
- picrust_predict_metagenomes revision 49b6c4392fdc was installed
Multiple Alignments
- mafft was updated to 15974dd17515
Phylogenetics
- hyphy_gard revision 6283babe736e was installed
- hyphy_absrel revision f73435dc282b was installed
Picard
- picard was updated to f6ced08779c4
- picard was updated to a1f0b3f4b781
SAM/BAM
- samtools_fastx revision a8d69aee190e was installed
- samtool_filter2 was updated to 649a225999a5
- samtools_bedcov was updated to 9149ad20699a
VCF/BCF
- bcftools_annotate was updated to 8e01baf41774
- bcftools_call was updated to 5801eff9ac7e
- bcftools_cnv was updated to b2d1b7dda2b7
- vcffilter was updated to fa24bf0598f4
Variant Calling
- lofreq_viterbi revision ecd80c7c3886 was installed
- lofreq_call revision 03627f24605f was installed
- freebayes was updated to ef2c525bd8cd